COVID-19, AMR and India

Maybe it’s not a coincidence that India is today the site of the world’s largest COVID-19 outbreak and the world’s most prominent source of antimicrobial resistant (AMR) pathogens, a.k.a. ‘superbugs’. The former fiasco is the product of failures on multiple fronts – including policy, infrastructure, logistics, politics and even ideology, before we need to consider faster-spreading variants of the novel coronavirus. I’m not sure of all the factors that have contributed to AMR’s burgeoning in India; some of them are irrational use of broad-spectrum antibiotics, poor public hygiene, laws that disprivilege ecological health and subpar regulation of hospital practices.

But all this said, both the second COVID-19 wave and the rise of AMR have benefited from being able to linger in the national population for longer. The longer the novel coronavirus keeps circulating in the population, the more opportunities there are for new variants to appear; the longer pathogens are exposed repeatedly to antimicrobial agents in different environments, the more opportunities they have to develop resistance. And once these things happen, their effects on their respective crises are exacerbated by the less-than-ideal social, political and economic contexts in which they manifest.

Again, I should emphasise that if these afflictions have been assailing India for such a long time and in increasingly stronger ways, it’s because of many distinct, and some overlapping, forces – but I think it’s also true that the resulting permission for pathogens to persist, at scale to boot, makes India more vulnerable than other countries might be to problems of the emergent variety. And given the failures that give rise to this vulnerability, this can be one hell of a vicious cycle.

COVID-19, due process and an SNR problem

At a press conference streamed live on March 18, the head of the European Medicines Agency (EMA) announced that the body – which serves as the European Union’s drug and vaccine regulator – had concluded that the AstraZeneca COVID-19 vaccine was not associated with unusual blood clots that some vaccine recipients had reported in multiple countries. The pronouncement marked yet another twist in the roller-coaster ride the embattled shot has experienced over the past few months. But it has also left bioethicists debating how it is that governments should respond to a perceived crisis over vaccines during a pandemic.

Over the last two weeks or so, a fierce debate raged after a relatively small subset of people who had received doses complained of developing blood clots related to potentially life-threatening conditions. AstraZeneca, a British-Swedish company, didn’t respond to the concerns at first even though the EMA and the WHO continued to hold their ground: that the vaccine’s benefits outweighed its risks, so people should continue to take it. However, a string of national governments, including those of Germany, France and Spain, responded by pausing its rollout while scientists assessed the risks of receiving the vaccine.

Aside from allegations that AstraZeneca tried to dress up a significant mistake during its clinical trials of the vaccine as a ‘discovery’ and cherry-picked data from the trials to have the shot approved in different countries, the company has also been grappling with the fact that the shot was less efficacious than is ideal against infections by new, more contagious variants of the novel coronavirus.

But at the same time, the AstraZeneca vaccine is also one of the more affordable ones that scientists around the world have developed to quell the COVID-19 pandemic – more so than the Pfizer and Moderna mRNA vaccines. AstraZeneca’s candidate is also easier to store and transport, and is therefore in high demand in developing and under-developed nations around the world. Its doses are being manufactured by two companies, in India and South Korea, although geographically asymmetric demand has forced an accelerating vaccination drive in one country to come at the cost of deceleration in another.

Shot in the arm

Now that the EMA has reached its verdict, most of the 20 countries who had hit the pause button have announced that they will resume use of the vaccine. However, the incident has spotlighted a not-unlikely problem with the global vaccination campaign, and which could recur if scientists, ethicists, medical workers and government officials don’t get together to decide where they can draw the line between abundant precaution and harm.

In fact, there are two versions of this problem: one in countries that have a functional surveillance system that responds to adverse events following immunisation (AEFIs) and one in countries that don’t. An example of the former is Germany, which, according to the New York Times, decided to pause the rollout based on seven reports of rare blood clots from a pool of 1.6 million recipients – a naïve incidence rate of 0.0004375%. But as rare disorders go, this isn’t a negligible figure.

One component of the post-AEFI response protocol is causality assessment, and one part of this is for experts to check if certain purported side-effects are clustered in time and then to compare those to the illness’s time distribution for a long time before the pandemic. It’s possible that such clustering could have prompted health officials in Germany and other countries to suspend the rollout.

The Times quoted a German health ministry statement saying, “The state provides the vaccine and therefore has special duties of care”. These care considerations include what the ministry understands to be the purpose of the rollout (to reduce deaths? To keep as many people healthy as possible?) read together with the fact that vaccines are like drugs except in one important way: they’re given to healthy – and not to sick – people. To quote Stephan Lewandowsky, an expert of risk communication at the University of Bristol, from Science:

“You’ve got to keep the public on board. And if the public is risk-averse, as it is in Europe … it may have been the right decision to stop, examine this carefully and then say, ‘The evidence, when considered transnationally, clearly indicates it is safe to go forward.’”

On the other hand is the simpler and opposing calculus of how many people didn’t develop blood clots after taking the vaccine, how many more people the virus is likely to have infected in the time the state withheld the vaccine, how many of them were at greater risk of developing complications due to COVID-19 – topped off by the fact of the vaccines being voluntary. On this side of the argument, the state’s carefulness is smothering, considering it’s using a top-down policy without accounting for local realities or the state’s citizens’ freedom to access or refuse the vaccine during a pandemic.

Ultimately there appears to be no one right answer, at least in a country where there’s a baseline level of trust that the decision-making process included a post-vaccination surveillance system that’s doing its job. Experts have also said governments should consider ‘mixed responses’ – like continuing rollouts while also continuing to examine the vaccines, given the possibility that a short-term review may have missed something a longer term exercise could find. One group of exerts in India has even offered a potential explanation.

The background rate

In countries where such a system doesn’t exist, or does but is broken, like India, there is actually one clear answer: to be transparent and accountable instead of opaque and intractable. For example, N.K. Arora, a member of India’s National COVID-19 Task Force, told The Hindu recently that while the body would consider post-vaccination data of AstraZeneca’s vaccine, it also believed the fraction of worrying cases to be “very, very low”. Herein lies the rub: how does it know?

As of early March, according to Arora, the Union health ministry had recorded “50-60” cases of AEFIs that may or may not be related to receiving either of the two vaccines in India’s drive, Covaxin and Covishield. (The latter is the name of AstraZeneca’s shot in India.) Reading this with Arora’s statements and some other facts of the case, four issues become pertinent.

First is the deceptively simple problem of the background rate. Journalist Priyanka Pulla’s tweets prompt multiple immediate concerns on this front. If India had reported 10 cases of disease X in 20 years, but 10 more cases show up within two weeks after receiving one dose of a vaccine, should we assume the vaccine caused them? No – but it’s a signal that we should check for the existence of a causal link.

Experts will need to answer a variety of questions here: How many people have disease X in India? How many people of a certain age-group and gender have disease X? How many people of different religious and/or ethnic groups have disease X? How many cases of disease X are we likely to have missed (considering disease-underreporting is a hallmark of Indian healthcare)? How many cases of disease X should we expect to find in the population being vaccinated in the absence of a vaccine? Do the 10 new cases, or any subset of them, have a common but invisible cause unrelated to the vaccine? Do we have the data for all these considerations?

Cornelia Betsch, a psychologist at the University of Erfurt, told Science that “most of the cases of rare blood disorders were among young women, the group where vaccine hesitancy already runs highest”. Can India confirm or deny that this trend is reflected in its domestic data as well? This seems doubtful. Sarah Iqbal reported for The Wire Science in September 2020 that “unequal access to health”, unequal exposure to potentially disease-causing situations, unequal representation in healthcare data and unequal understanding of diseases in non-cis-male bodies together already render statements like ‘women have better resistance to COVID-19’ ignorant at best. Being able to reliably determine and tackle sex-wise vaccine hesitancy seems like a tall order.

The second issue is easy to capture in one question, which also makes it harder to ignore: why hasn’t the government released reports or data about AEFIs in India’s COVID-19 vaccination drive after February 26, 2021?

On March 16, a group of 29 experts from around the country – including virologist T. Jacob John, who has worked with the Indian Council of Medical Research on seroprevalence surveys and has said skeptics of the Indian drug regulator’s Covaxin approval were “prejudiced against Indian science/product” – wrote to government officials asking for AEFI data. They said in their letter:

We note with concern that critical updates to the fact sheets recommended by the CDSCO’s Subject Expert Committee have not been issued, even though they are meant to provide additional guidance and clarify use of the vaccines in persons such as those with allergies, who are immunocompromised or using immunosuppressants, or using blood thinners/anticoagulants. There are gaps in AEFI investigations at the local level, affecting the quality of evidence submitted to State and National AEFI Committees who depend on these findings for making causality assessments. The National AEFI Committee also has a critical role in assessing cases that present as a cluster and to explore potential common pathways. In our letter dated January 31, 2021, we asked for details of all investigations into deaths and other serious AEFIs, as well as the minutes of AEFI monitoring committees, and details of all AEFI committee members and other experts overseeing the vaccine rollout. We have not received any response.

City of Omelas

The third issue is India’s compliance with AEFI protocols – which, when read together with Pulla’s investigation of Bharat Biotech’s response to a severe adverse event in its phase 3 trials for Covaxin, doesn’t inspire much confidence. For example, media reports suggest that medical workers around the country aren’t treating all post-vaccination complaints of ill-health, but especially deaths, on equal footing. “Currently, we are observing gaps in how serious adverse events are being investigated at the district level,” New Delhi-based health activist Malini Aisola told IndiaSpend on March 9. “In many instances local authorities have been quick to make public statements that there is no link to the vaccine, even before investigations and post mortem have taken place. In some cases there is a post mortem, in some cases there isn’t.”

Some news reports of people having died of heart-related issues at a point of time after taking Covishield also include quotes from doctors saying the victims were known to have heart ailments – as if to say their deaths were not related to the vaccine.

But in the early days of India’s COVID-19 epidemic, experts told The Wire that even when people with comorbidities, like impaired kidney function, died due to renal failure and tested positive for COVID-19 at the time of death, their passing could be excluded from the official deaths tally only if experts had made sure the two conditions were unrelated – and this is difficult. Having a life-threatening illness doesn’t automatically make it the cause of death, especially since COVID-19 is also known to affect or exacerbate some existing ailments, and vice versa.

Similarly, today, is the National AEFI Committee for the COVID-19 vaccination drive writing off deaths as being unrelated to the vaccine or are they being considered to be potential AEFIs? And is the committee deliberating on these possibilities before making a decision? The body needs to be transparent on this front a.s.a.p. – especially since the government has been gifting AstraZeneca’s shots to other countries and there’s a real possibility of it suppressing information about potential problems with the vaccine to secure its “can do no wrong” position.

Finally, there’s the ‘trolley problem’, as the Times also reported – an ethical dilemma that applies in India as well as other countries: if you do nothing, three people will get hit by a train and die; if you pull a lever, the train will switch tracks and kill one person. What do you do?

But in India specifically, this dilemma is modified by the fact that due process is missing; this changes the problem to one that finds better, more evocative expression in Ursula K. Le Guin’s short story The Ones Who Walk Away from Omelas (1973). Omelas is a fictitious place, like paradise on Earth, where everyone is happy and content. But by some magic, this is only possible if the city can keep a child absolutely miserable, wretched, with no hope of a better life whatsoever. The story ends by contemplating the fate of those who discover the city’s gory secret and decide to leave.

The child in distress is someone – even just one person – who has reported an AEFI that could be related to the vaccine they took. When due process plays truant, when a twisted magic that promises bliss in return for ignorance takes shape, would you walk away from Omelas? And can you freely blame those who hesitate about staying back? Because this is how vaccine hesitancy takes root.

The Wire
March 20, 2021

We did start the fire

This is one of the dumbest things I’ve seen done in a while:

The Asian News International network tweeted that a group of Indian priests had performed a long yagya in Tokyo for the express purpose of purifying the environment. A yagya (or a yagna, although I’m not sure if they’re the same) typically involves keeping a pyre of wooden logs lubricated with ghee burning for a long time. So a plea to the gods to clear the airs was encoded in many kilograms of carbon dioxide? Clearly these god-fearing gentlemen insist that they will accept only the gods’ solutions to their problems – not anyone else’s, no matter how motivated. I dearly hope that, if nothing else, the event will create an ironic awareness of what’s at stake.

At least the other shit-peddlers back home have had the sense to not force the cow piss down our throats (ignoring the massive public healthcare and R&D funding cuts, of course). If my ire seems disproportionate to the amount of pollutants these yagnas will have released, it’s because I fear someone else will get ideas now, especially those aspiring to get into the record books. (How often have you heard the anchor on Sun TV news croon at the tail-end of the segment at 7 pm everyday, “XYZ கின்னெஸ் சாதனை படைத்தார்” – “XYZ set a Guinness world record”?)

Featured image credit: kabetojamaicafotografia/Flickr, CC BY 2.0.

Why India’s rabies problem is especially bad

India bears the world’s heaviest rabies burden, according to a new study from the Global Alliance for Rabies Control, accounting for 35% of all deaths due to the disease. Here’s why you shouldn’t be surprised (data from GARC).

1. Vaccination coverage of dogs

Vaccination coverage of dogs in BRICS nations.
Vaccination coverage of dogs in BRICS nations.

Among the BRICS nations, India has the highest population of dogs and one of the lowest rates of vaccination.

2. Chances of receiving care

Chances of receiving prophylactic care after a rabid animal bite, in BRICS countries.
Chances of receiving prophylactic care after a rabid animal bite, in BRICS countries.

If you were bitten by an animal, in India the animal could be rabid 54% of time, and in China, 55%. But of every thousand people bitten by rabid animals, 24 don’t receive palliative care in India, while only 4 people don’t receive it in China.

3. Access to post-exposure care

Years of life lost due to rabies, in BRICS countries.
Years of life lost due to rabies, in BRICS countries.

Despite China being more populous than India and having a greater bite-incidence (1,107 vs. 691, per 100,000 people), the years of life lost due to rabies is higher in India. The GARC report uses multiple studies to come up with different estimates of that number, but India’s lower limit is comfortably higher than other BRICS countries’ upper limits. This is about there being more people in India exposed to dog-bites – as well as about the physical access to, the quality of and the affordability of care.

The result…

Types of losses incurred due to the burden of rabies, in BRICS countries.
Types of losses incurred due to the burden of rabies, in BRICS countries.

Curious Bends – expanding nuclear power, the Bombay Blood Group, doubting the tobacco-cancer link & more

1. India’s new forest laws are criminalising tribes’ once-normal livelihoods

“India has forest coverage of 23% and more than 200 million live in and around these forests and depend on them for their life, livelihood and cultural identity. But under the banner (some call it “guise”) of scientific management of forests, the intended objectives of our forest policies has been to “maximise profits” by sale of forest products and discouraging forest dwellers from “exploiting” forest resources. To do so, some trees like red sanders have been ‘nationalised’. This legal appropriation of forests has led to the ‘criminalisation’ of normal livelihood activities of forest-dependent people, making them ‘encroachers’.” (4 min read, hindustantimes.com)

2. A large-scale expansion of nuclear power in India should include fuel-reprocessing, if only to minimise the amount of radioactive waste lying around

“Putting aside additional uranium resources that may be identified in the future, and also putting aside nuclear energy’s future growth rate, one must conclude that uranium-based fission energy cannot in any event last for more than a few centuries. This is not much time—when measured against the length of time that humankind is likely to exist. We, the authors, believe that the current generation bears a responsibility toward future generations not to deplete the world’s uranium resources. This means that uranium cannot be discarded as waste after only 1 percent of its energy is utilized—as happens today. Rather, reprocessing and recycling must be pursued so that 75 percent of uranium (if not more) is used to produce fission energy. Reprocessing and recycling have the potential, compared to the once-through use of uranium, to increase by a factor of at least 50 the amount of time during which humankind can derive fission energy from uranium resources.” (6 min read, thebulletin.org)

3. Why is a rare blood group more common in India than in Europe or the US?

“What took Swapna by surprise actually takes a lot of people by surprise. It’s because 1-in-17,000 people report something called the Bombay Blood Group. That’s one person in 17,000. Now imagine the Eden Gardens stadium filled with capacity with cricket fans. Five people in that stadium would have this blood group. And that’s how rare it is in India. In the United States and Europe, it’s even rarer. It’s one in a million, even if that. And that’s what we’re putting under the microscope today. The only difficult thing about living life with a Bombay Blood Group is getting a transfusion, if you need it. You cant just stroll into a bloodbank and ask for Bombay-type. It’s too rare.” (14 min listen, audiomatic.in)

+ This new podcast, The Intersection, is produced by the journalists Padmaparna Ghosh and Samanth Subramanian.

4. The Indian government is suspicious of the link between tobacco and cancer

“In a move denounced by India’s health activists, the Central government on Tuesday deferred its decision mandating that pictorial health warnings cover 85% of all tobacco packaging. The postponement comes a day before the rule was to come into effect and a day after puzzling remarks by Dilip Gandhi, the head of the parliamentary panel examining provisions of the Cigarettes and Other Tobacco Products Act. “All agree on the harmful effects of tobacco,” PTI reported Gandhi as saying. “But there is no Indian survey report to prove that tobacco consumption leads to cancer. All the studies are done abroad. Cancer does not happen only because of tobacco.”” (4 min read, scroll.in)

5. “You come to such a big hospital and expect it to be free?”

“Take the example of Selphili Kumar, a 25-year-old mother. In a government hospital in Ambikapur, she shivered alone on a dirty cot, waiting for the doctor to treat her two-day-old son, who had been sick and weak since birth. There was intense pressure in her abdomen and sudden chills racking her body, but all she could think about was money. Her husband, a labourer with a monthly income of about Rs3,500, had paid Rs1,000 to get to the hospital from her village of Kailashpur, Rs600 to order her post-cesarian medicine from the pharmacy (that the hospital claimed they didn’t have on hand), and Rs1,500 for her baby’s treatment. Wrapping her purple sweater tightly around her, her breaths short and shallow, Kumar worried that staying in the hospital longer would only rack up the bill further—a bill that, legally, shouldn’t have existed.” (14 min read, qz.com)

Chart of the Week

“Archeological studies show that societies in the past were very violent indeed. The share of people killed by other people was often more 10%. Ethnographic evidence confirms that violence is very common in nonstate societies and drastically higher than in modern state societies. The historical record of homicide rates in Europe shows that modern levels of violence were only arrived at after a long decline. In these barcharts we compare rates of violence – rather than shares of violent deaths. Again, ethnographic studies show that violence in nonstate societies was much higher than in modern state societies.” (ourworldindata.org)

Rate of violent deaths in nonstate and state societies; Max Roser. Credit: ourworldindata.org
Rate of violent deaths in nonstate and state societies; Max Roser. Credit: ourworldindata.org

Curious Bends – Indian Luddites, an academic career, the great forgetting and more

Curious Bends is a weekly newsletter about science, tech., data and India. Akshat Rathi and I curate it. You can subscribe to it here. If have feedback, suggestions, or would just generally like to get in touch, just email us.

1. Say with pride that we’re Luddites

Science is often confused with technology in India. The consequences range in flavour from amusing to dire – for example, we celebrate rockets, not rocket scientists. So we fund rockets, not rocket scientists. This piece explores the history of this perception with interesting and insightful episodes from the past. Beware, though: some of them have evolved many grey areas. (8 min read)

2. India’s hopes for development rely on its public health strategies

That India is neither a middling nor a superpower nation comes down to how good access to health, water, sanitation and education in it are. Health, in particular, needs special attention because of two reasons. First: India shares a disproportionate fraction of the world’s disease burden – especially among non-communicable diseases. Second: the skill and capital needed to resolve the problem is controlled by private interests operating only at state-wide levels. (10 min read)

3. Forgoing a fat pay cheque is totally worth it to become an academic

“The placement season is just starting for the 2015 graduates. And newspapers are already talking about crore+ salaries this year. That it would be for a very small number of graduates is lost on most people. And in this race to get the biggest package, one career that is often forgotten is that of an academic.” (6 min read)

+ The author, Dheeraj Sanghi, is a professor of computer science at the Indian Institute of Technology, Kanpur.

4. China’s JUNO launches international collaboration while India’s INO looks on

The Jiangmen Underground Neutrino Observatory is expected to be completed by 2020, and will search for answers to unsolved problems in neutrino physics. More importantly, it will be China’s second big neutrino experiment and second also to feature an international collaboration of scientists and institutions. The India-based Neutrino Observatory, also foreseeing completion by 2020, is yet to find similar interest. As has frustratingly been the case, it’s the scientists who lose out. (3 min read)

5. Indian universities ban dissections

A campaign led by People for the Ethical Treatment of Animals has borne its fruits: a central body that sets standards for university education in India has banned dissections in zoology and life sciences courses. This move solves some legitimate problems but exacerbates some silly others. For one, removing endangered animals from the table doesn’t mean non-endangered ones can’t be put there. For another, assuming “most zoology students do not use the knowledge gained from dissections after they graduate” excludes those who do, and education is for everybody. (3 min read)

Featured longread: What happened to each one of us before the age of seven?

“… if the memory was a very emotional one, children were three times more likely to retain it two years later. Dense memories – if they understood the who, what, when, where and why – were five times more likely to be retained than disconnected fragments. Still, oddball and inconsequential memories such as the bounty of cookies will hang on, frustrating the person who wants a more penetrating look at their early past.” (18 min read)

Chart of the week

Gone are the days when Britain built most of the world’s ships and ruled the seas. By the end of the Second World War, the US was producing 90% of all the world’s ships by weight. By the 1990s, though, Japan and South Korea had in turns acquired the title. Now this decisive distinction could belong to China. Today, it produces around 35% of the world’s ships. The Economist has more.

World shipbuilding  of total in gross tonnage

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